City to City Flights
- San José - San Juan
- San José - San Pedro Sula
- San José - San Salvador
- San José - Santa Clara
- San José - Santa Cruz
- San José - Santa Marta
- San José - Santiago de Chile
- San José - Santiago de los Caballeros
- San José - Santo Domingo
- San José - Sao Paulo
- San José - St Maarten
- San José - Tampa
- San José - Toronto
- San José - Tulum
- San José - Valencia
- San José - Washington Dulles
- San Juan - Armenia
- San Juan - Aruba
- San Juan - Asuncion
- San Juan - Baltimore
- San Juan - Barranquilla
- San Juan - Belize
- San Juan - Belo Horizonte
- San Juan - Bogota
- San Juan - Brasilia
- San Juan - Bridgetown
- San Juan - Bucaramanga
- San Juan - Buenos Aires
- San Juan - Cali
- San Juan - Cancun
- San Juan - Caracas
- San Juan - Cartagena
- San Juan - Chiclayo
- San Juan - Comayagua, Tegucigalpa
- San Juan - Cordoba
- San Juan - Cucuta
- San Juan - Curacao
- San Juan - David
- San Juan - Felipe Angeles, Mexico City
- San Juan - Florianopolis
- San Juan - Georgetown
- San Juan - Guadalajara
- San Juan - Guatemala
- San Juan - Guayaquil
- San Juan - Havana
- San Juan - Kingston
- San Juan - Lima
- San Juan - Managua
- San Juan - Manaus
- San Juan - Manta
- San Juan - Medellin
- San Juan - Mendoza
- San Juan - Mexico City
- San Juan - Montego Bay
- San Juan - Monterrey
- San Juan - Montevideo
- San Juan - Panama
- San Juan - Paramaribo
- San Juan - Pereira
- San Juan - Port of Spain
- San Juan - Porto Alegre
- San Juan - Quito
- San Juan - Rio de Janeiro
- San Juan - Rosario
- San Juan - San Andres Island
- San Juan - San José
- San Juan - San Pedro Sula
- San Juan - San Salvador
- San Juan - Santa Clara
- San Juan - Santa Cruz
- San Juan - Santa Marta
- San Juan - Santiago de Chile
- San Juan - Santiago de los Caballeros
- San Juan - Sao Paulo
- San Juan - St Maarten
- San Juan - Tulum
- San Pedro Sula - Armenia
- San Pedro Sula - Aruba
- San Pedro Sula - Asuncion
- San Pedro Sula - Atlanta
- San Pedro Sula - Austin
- San Pedro Sula - Baltimore
- San Pedro Sula - Barcelona, Venezuela
- San Pedro Sula - Barquisimeto
- San Pedro Sula - Barranquilla
- San Pedro Sula - Belize
- San Pedro Sula - Belo Horizonte
- San Pedro Sula - Bogota
- San Pedro Sula - Boston
- San Pedro Sula - Brasilia
- San Pedro Sula - Bridgetown
- San Pedro Sula - Bucaramanga
- San Pedro Sula - Buenos Aires
- San Pedro Sula - Cali
- San Pedro Sula - Cancun
- San Pedro Sula - Caracas
- San Pedro Sula - Cartagena
- San Pedro Sula - Chicago
- San Pedro Sula - Chiclayo
- San Pedro Sula - Cordoba
- San Pedro Sula - Cucuta
- San Pedro Sula - Curacao
- San Pedro Sula - David
- San Pedro Sula - Denver
- San Pedro Sula - Felipe Angeles, Mexico City
- San Pedro Sula - Florianopolis
- San Pedro Sula - Fort Lauderdale
- San Pedro Sula - Georgetown
- San Pedro Sula - Guadalajara
- San Pedro Sula - Guatemala
- San Pedro Sula - Guayaquil
- San Pedro Sula - Havana
- San Pedro Sula - Kingston
- San Pedro Sula - Las Vegas
- San Pedro Sula - Lima
- San Pedro Sula - Los Angeles
- San Pedro Sula - Managua
- San Pedro Sula - Manaus
- San Pedro Sula - Manta
- San Pedro Sula - Maracaibo
- San Pedro Sula - Medellin
- San Pedro Sula - Mendoza
- San Pedro Sula - Mexico City
- San Pedro Sula - Miami
- San Pedro Sula - Montego Bay
- San Pedro Sula - Monterrey
- San Pedro Sula - Montevideo
- San Pedro Sula - Montreal
- San Pedro Sula - Nassau
- San Pedro Sula - New York
- San Pedro Sula - Orlando
- San Pedro Sula - Panama
- San Pedro Sula - Paramaribo
- San Pedro Sula - Pereira
- San Pedro Sula - Port of Spain
- San Pedro Sula - Porto Alegre
- San Pedro Sula - Punta Cana
- San Pedro Sula - Quito
- San Pedro Sula - Raleigh
- San Pedro Sula - Rio de Janeiro
- San Pedro Sula - Rosario
- San Pedro Sula - San Andres Island
- San Pedro Sula - San Francisco
- San Pedro Sula - San José
- San Pedro Sula - San Juan
- San Pedro Sula - San Salvador
- San Pedro Sula - Santa Clara
- San Pedro Sula - Santa Cruz
- San Pedro Sula - Santa Marta
- San Pedro Sula - Santiago de Chile
- San Pedro Sula - Santiago de los Caballeros
- San Pedro Sula - Santo Domingo
- San Pedro Sula - Sao Paulo
- San Pedro Sula - St Maarten
- San Pedro Sula - Tampa
- San Pedro Sula - Toronto
- San Pedro Sula - Tulum
- San Pedro Sula - Valencia
- San Pedro Sula - Washington Dulles
- San Salvador - Armenia
- San Salvador - Aruba
- San Salvador - Asuncion
- San Salvador - Atlanta
- San Salvador - Austin
- San Salvador - Baltimore
- San Salvador - Barcelona, Venezuela
- San Salvador - Barquisimeto
- San Salvador - Barranquilla
- San Salvador - Belize
- San Salvador - Belo Horizonte
- San Salvador - Bogota
- San Salvador - Boston
- San Salvador - Brasilia
- San Salvador - Bridgetown
- San Salvador - Bucaramanga
- San Salvador - Buenos Aires
- San Salvador - Cali
- San Salvador - Cancun
- San Salvador - Caracas
- San Salvador - Cartagena
- San Salvador - Chicago
- San Salvador - Chiclayo
- San Salvador - Comayagua, Tegucigalpa
- San Salvador - Cordoba
- San Salvador - Cucuta
- San Salvador - Curacao
- San Salvador - David
- San Salvador - Denver
- San Salvador - Felipe Angeles, Mexico City
- San Salvador - Florianopolis
- San Salvador - Fort Lauderdale
- San Salvador - Georgetown
- San Salvador - Guadalajara
- San Salvador - Guatemala
- San Salvador - Guayaquil
- San Salvador - Havana
- San Salvador - Kingston
- San Salvador - Las Vegas
- San Salvador - Lima
- San Salvador - Los Angeles
- San Salvador - Managua
- San Salvador - Manaus
- San Salvador - Manta
- San Salvador - Maracaibo
- San Salvador - Medellin
- San Salvador - Mendoza
- San Salvador - Mexico City
- San Salvador - Miami
- San Salvador - Montego Bay
- San Salvador - Monterrey